STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TONSLTonsoku like, DNA repair protein. (1061 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.999
ENSCAPP00000002257
annotation not available
    
 0.977
SSRP1
Structure specific recognition protein 1.
   
  0.969
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 0.962
ENSCAPP00000013166
annotation not available
    
  0.958
ENSCAPP00000016562
annotation not available
    
  0.958
SMARCAL1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1.
   
 0.955
CDC73
Cell division cycle 73.
    
  0.955
ENSCAPP00000002903
annotation not available
    
  0.952
ERCC6
ERCC excision repair 6, chromatin remodeling factor.
    
 0.952
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.