STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX6Sorting nexin 6. (331 aa)    
Predicted Functional Partners:
SNX1
Sorting nexin 1.
   
 0.994
ANKFY1
Ankyrin repeat and FYVE domain containing 1.
    
 0.992
VPS35
VPS35 retromer complex component.
   
 0.973
ENSCAPP00000018579
annotation not available
    
 0.972
SNX8
Sorting nexin 8.
    
 0.969
SNX5
Sorting nexin 5.
  
 
0.965
SNX27
Sorting nexin 27.
    
 0.961
VPS26A
VPS26, retromer complex component A.
    
 0.959
VPS26B
VPS26, retromer complex component B.
    
 0.956
ENSCAPP00000012690
annotation not available
   
 0.956
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.