STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL3A1Collagen type III alpha 1 chain. (1034 aa)    
Predicted Functional Partners:
COL1A2
Collagen type I alpha 2 chain.
  
0.998
COL5A2
Collagen type V alpha 2 chain.
  
 
0.996
ENSCAPP00000016172
annotation not available
  
 
0.996
LUM
Lumican.
   
 0.991
COL5A1
Collagen type V alpha 1 chain.
  
 
0.973
ENSCAPP00000011462
annotation not available
   
 0.945
ENSCAPP00000002456
annotation not available
  
 
0.944
ENSCAPP00000016591
annotation not available
    
 0.937
COL5A3
Collagen type V alpha 3 chain.
  
 
0.934
COL2A1
Collagen type II alpha 1 chain.
  
  
0.931
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.