ENSCAPP00000012225 protein (Cavia aperea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCAPP00000012225

annotation not available (584 aa)

Predicted Functional Partners:

TRIM28

0.652

TRIM24

0.582

MYSM1

0.562

KDM6B

0.552

ENSCAPP00000013044

0.546

ENSCAPP00000013045

0.544

BARD1

0.542

MRPS11

0.539

MRPS6

0.536

ENSCAPP00000004389

0.536

Your Current Organism:

Cavia aperea

NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BARD1	ENSCAPP00000012225	ENSCAPP00000016499	ENSCAPP00000012225	BRCA1 associated RING domain 1.	annotation not available	0.542
BARD1	KDM6B	ENSCAPP00000016499	ENSCAPP00000016710	BRCA1 associated RING domain 1.	Lysine demethylase 6B.	0.952
BARD1	MYSM1	ENSCAPP00000016499	ENSCAPP00000004064	BRCA1 associated RING domain 1.	Myb like, SWIRM and MPN domains 1.	0.990
ENSCAPP00000004389	ENSCAPP00000012225	ENSCAPP00000004389	ENSCAPP00000012225	annotation not available	annotation not available	0.536
ENSCAPP00000004389	MRPS11	ENSCAPP00000004389	ENSCAPP00000011012	annotation not available	Mitochondrial ribosomal protein S11.	0.998
ENSCAPP00000004389	MRPS6	ENSCAPP00000004389	ENSCAPP00000001532	annotation not available	Mitochondrial ribosomal protein S6.	0.998
ENSCAPP00000012225	BARD1	ENSCAPP00000012225	ENSCAPP00000016499	annotation not available	BRCA1 associated RING domain 1.	0.542
ENSCAPP00000012225	ENSCAPP00000004389	ENSCAPP00000012225	ENSCAPP00000004389	annotation not available	annotation not available	0.536
ENSCAPP00000012225	ENSCAPP00000013044	ENSCAPP00000012225	ENSCAPP00000013044	annotation not available	annotation not available	0.546
ENSCAPP00000012225	ENSCAPP00000013045	ENSCAPP00000012225	ENSCAPP00000013045	annotation not available	annotation not available	0.544
ENSCAPP00000012225	KDM6B	ENSCAPP00000012225	ENSCAPP00000016710	annotation not available	Lysine demethylase 6B.	0.552
ENSCAPP00000012225	MRPS11	ENSCAPP00000012225	ENSCAPP00000011012	annotation not available	Mitochondrial ribosomal protein S11.	0.539
ENSCAPP00000012225	MRPS6	ENSCAPP00000012225	ENSCAPP00000001532	annotation not available	Mitochondrial ribosomal protein S6.	0.536
ENSCAPP00000012225	MYSM1	ENSCAPP00000012225	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.562
ENSCAPP00000012225	TRIM24	ENSCAPP00000012225	ENSCAPP00000013766	annotation not available	Tripartite motif containing 24.	0.582
ENSCAPP00000012225	TRIM28	ENSCAPP00000012225	ENSCAPP00000011915	annotation not available	Tripartite motif containing 28.	0.652
ENSCAPP00000013044	ENSCAPP00000012225	ENSCAPP00000013044	ENSCAPP00000012225	annotation not available	annotation not available	0.546
ENSCAPP00000013044	MRPS11	ENSCAPP00000013044	ENSCAPP00000011012	annotation not available	Mitochondrial ribosomal protein S11.	0.572
ENSCAPP00000013044	MYSM1	ENSCAPP00000013044	ENSCAPP00000004064	annotation not available	Myb like, SWIRM and MPN domains 1.	0.650
ENSCAPP00000013045	ENSCAPP00000012225	ENSCAPP00000013045	ENSCAPP00000012225	annotation not available	annotation not available	0.544