STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000012467annotation not available (406 aa)    
Predicted Functional Partners:
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 0.574
SUFU
SUFU negative regulator of hedgehog signaling.
    
 0.557
IKZF3
IKAROS family zinc finger 3.
    
 
0.552
KDM6B
Lysine demethylase 6B.
    
 0.552
IKZF1
IKAROS family zinc finger 1.
    
  
0.550
ENSCAPP00000013045
annotation not available
    
  0.544
GTF3C3
General transcription factor IIIC subunit 3.
    
 0.542
BARD1
BRCA1 associated RING domain 1.
    
 0.542
MRPS11
Mitochondrial ribosomal protein S11.
    
  0.539
MRPS6
Mitochondrial ribosomal protein S6.
    
  0.536
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.