STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPUSD1RNA pseudouridine synthase domain containing 1. (306 aa)    
Predicted Functional Partners:
ENSCAPP00000004394
annotation not available
  
 
 0.849
GTPBP3
GTP binding protein 3, mitochondrial.
   
 
 0.844
PUS7L
Pseudouridine synthase 7 like.
   
 
 0.819
ENSCAPP00000016271
annotation not available
  
 
 0.819
MRPL21
Mitochondrial ribosomal protein L21.
   
   0.811
MRM3
Mitochondrial rRNA methyltransferase 3.
  
 
 0.810
RPL23
Ribosomal protein L23.
   
 
 0.802
GTPBP8
GTP binding protein 8 (putative).
   
 
 0.796
MTG1
Mitochondrial ribosome associated GTPase 1.
   
 
 0.778
MRPL13
Mitochondrial ribosomal protein L13.
  
   0.775
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.