STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCAPP00000016361annotation not available (114 aa)    
Predicted Functional Partners:
KDM1A
Lysine demethylase 1A.
    
 0.748
HDAC1
Histone deacetylase 1.
    
 0.724
GATA1
GATA binding protein 1.
   
 0.645
EHMT2
Euchromatic histone lysine methyltransferase 2.
   
 0.638
CEBPE
CCAAT enhancer binding protein epsilon.
    
 0.630
HDAC2
Histone deacetylase 2.
    
 0.612
RCOR1
REST corepressor 1.
    
 0.596
G6PC3
Glucose-6-phosphatase catalytic subunit 3.
    
 0.583
MYSM1
Myb like, SWIRM and MPN domains 1.
    
 0.577
SUFU
SUFU negative regulator of hedgehog signaling.
    
 0.557
Your Current Organism:
Cavia aperea
NCBI taxonomy Id: 37548
Other names: Brazilian guinea pig, C. aperea
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