Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFR42752.1 | SFR47858.1 | SAMN04488073_1036 | SAMN04488073_1902 | comF family protein. | Phage integrase, N-terminal SAM-like domain. | 0.670 |
SFR42752.1 | SFR55029.1 | SAMN04488073_1036 | SAMN04488073_2704 | comF family protein. | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | 0.405 |
SFR42752.1 | SFR61748.1 | SAMN04488073_1036 | SAMN04488073_3473 | comF family protein. | Phage integrase family protein; Belongs to the 'phage' integrase family. | 0.670 |
SFR42752.1 | adk | SAMN04488073_1036 | SAMN04488073_2768 | comF family protein. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.514 |
SFR42752.1 | xerD | SAMN04488073_1036 | SAMN04488073_2803 | comF family protein. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.670 |
SFR47858.1 | SFR42752.1 | SAMN04488073_1902 | SAMN04488073_1036 | Phage integrase, N-terminal SAM-like domain. | comF family protein. | 0.670 |
SFR47858.1 | SFR55029.1 | SAMN04488073_1902 | SAMN04488073_2704 | Phage integrase, N-terminal SAM-like domain. | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | 0.572 |
SFR55021.1 | SFR55029.1 | SAMN04488073_2703 | SAMN04488073_2704 | Ribosome-associated protein. | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | 0.556 |
SFR55021.1 | SFR55037.1 | SAMN04488073_2703 | SAMN04488073_2705 | Ribosome-associated protein. | Probable lipoprotein NlpC. | 0.419 |
SFR55029.1 | SFR42752.1 | SAMN04488073_2704 | SAMN04488073_1036 | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | comF family protein. | 0.405 |
SFR55029.1 | SFR47858.1 | SAMN04488073_2704 | SAMN04488073_1902 | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | Phage integrase, N-terminal SAM-like domain. | 0.572 |
SFR55029.1 | SFR55021.1 | SAMN04488073_2704 | SAMN04488073_2703 | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | Ribosome-associated protein. | 0.556 |
SFR55029.1 | SFR55037.1 | SAMN04488073_2704 | SAMN04488073_2705 | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | Probable lipoprotein NlpC. | 0.506 |
SFR55029.1 | SFR61748.1 | SAMN04488073_2704 | SAMN04488073_3473 | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | Phage integrase family protein; Belongs to the 'phage' integrase family. | 0.572 |
SFR55029.1 | adk | SAMN04488073_2704 | SAMN04488073_2768 | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | 0.496 |
SFR55029.1 | xerD | SAMN04488073_2704 | SAMN04488073_2803 | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.572 |
SFR55037.1 | SFR55021.1 | SAMN04488073_2705 | SAMN04488073_2703 | Probable lipoprotein NlpC. | Ribosome-associated protein. | 0.419 |
SFR55037.1 | SFR55029.1 | SAMN04488073_2705 | SAMN04488073_2704 | Probable lipoprotein NlpC. | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | 0.506 |
SFR61748.1 | SFR42752.1 | SAMN04488073_3473 | SAMN04488073_1036 | Phage integrase family protein; Belongs to the 'phage' integrase family. | comF family protein. | 0.670 |
SFR61748.1 | SFR55029.1 | SAMN04488073_3473 | SAMN04488073_2704 | Phage integrase family protein; Belongs to the 'phage' integrase family. | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. | 0.572 |
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