STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR55709.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (908 aa)    
Predicted Functional Partners:
SFR48817.1
PAS domain S-box-containing protein.
 0.998
SFR61226.1
Na+/proline symporter.
  
 0.998
SFR46027.1
PAS domain S-box-containing protein.
 
 0.997
SFR55646.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
 0.994
SFR40759.1
Signal transduction histidine kinase.
 0.992
SFR43641.1
PAS domain S-box-containing protein.
 
 0.985
SFR57773.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.984
SFR50659.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.980
SFR42897.1
Diguanylate cyclase/phosphodiesterase.
 
0.979
SFR49156.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.975
Your Current Organism:
Marinobacter gudaonensis
NCBI taxonomy Id: 375760
Other names: CGMCC 1.6294, DSM 18066, LMG 23509, LMG:23509, M. gudaonensis, Marinobacter gudaonensis Gu et al. 2007, Marinobacter sp. 61A, Marinobacter sp. 61B, strain SL014B61A
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