STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmbr1lLimb development membrane protein 1 like. (492 aa)    
Predicted Functional Partners:
shh
Sonic hedgehog signaling molecule.
 
   
 0.641
LOC115411846
Indian hedgehog B protein-like.
 
   
 0.637
dhh
Desert hedgehog signaling molecule.
 
   
 0.582
ENSSORP00005001318
Low density lipoprotein receptor-related protein 4.
    
  0.503
ENSSORP00005003533
Low density lipoprotein receptor-related protein 2a.
    
  0.503
ENSSORP00005015094
Si:dkey-88l16.3.
    
  0.503
ENSSORP00005029324
annotation not available
    
  0.503
ENSSORP00005043651
annotation not available
    
  0.503
ENSSORP00005043657
annotation not available
    
  0.503
ptch1
Patched 1.
     
 0.484
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.