STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115419767T-cell surface glycoprotein CD8 alpha chain-like. (219 aa)    
Predicted Functional Partners:
LOC115428261
Major histocompatibility complex class I-related gene protein-like.
    
 0.987
ENSSORP00005042911
CD4-1 molecule.
   
 0.985
cd3e
CD3e molecule.
   
 
 0.980
LOC115419784
Uncharacterized LOC115419784.
   
 
 0.970
ENSSORP00005019876
annotation not available
   
  
 0.967
rpa2
Replication protein A2.
   
 0.951
LOC115430460
Beta-2-microglobulin-like.
   
 0.951
LOC115430664
Beta-2-microglobulin-like.
   
 0.951
LOC115417435
Tyrosine-protein kinase ZAP-70.
   
 0.946
syk
Spleen associated tyrosine kinase.
   
 0.946
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.