STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSORP00005002639Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae). (307 aa)    
Predicted Functional Partners:
malsu1
Mitochondrial assembly of ribosomal large subunit 1.
   
 
 0.931
mrpl47
Mitochondrial ribosomal protein L47.
   
 
 0.930
gtpbp3
GTP binding protein 3, mitochondrial.
   
 
 0.913
mrpl17
Mitochondrial ribosomal protein L17.
  
 
 0.901
gtpbp8
GTP binding protein 8 (putative).
  
 
 0.899
mrpl21
Mitochondrial ribosomal protein L21.
   
   0.891
ndufab1
NADH:ubiquinone oxidoreductase subunit AB1.
   
 
 0.887
mrpl43
Mitochondrial ribosomal protein L43.
    
   0.876
mtg1
Mitochondrial ribosome associated GTPase 1.
  
 
 0.871
mrpl11
Mitochondrial ribosomal protein L11.
   
 
 0.863
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.