STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vrk1VRK serine/threonine kinase 1. (436 aa)    
Predicted Functional Partners:
ltv1
LTV1 ribosome biogenesis factor.
    
 0.928
bysl
Bystin like.
    
 0.891
ENSSORP00005007613
RIO kinase 2 (yeast).
    
 0.884
ankle2
Ankyrin repeat and LEM domain containing 2.
   
 0.875
tsr1
TSR1 ribosome maturation factor.
    
 0.837
LOC115432762
Barrier-to-autointegration factor.
    
 0.829
ENSSORP00005045771
annotation not available
    
 0.829
rps3
Ribosomal protein S3.
    
 0.775
rps2
Ribosomal protein S2.
    
 0.752
golga4
Golgin A4.
    
 0.751
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.