STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mterf2Mitochondrial transcription termination factor 2. (375 aa)    
Predicted Functional Partners:
ykt6
YKT6 v-SNARE homolog.
     
 0.784
rpl23a
Ribosomal protein L23a.
    
   0.739
ENSSORP00005025411
Mitochondrial ribosomal protein L36.
    
 
 0.706
rpl4
Ribosomal protein L4.
    
   0.685
mrpl4
Mitochondrial ribosomal protein L4.
    
   0.685
rps16
Ribosomal protein S16.
    
   0.685
mrpl20
Mitochondrial ribosomal protein L20.
    
 
 0.669
mrrf
Mitochondrial ribosome recycling factor.
    
 
 0.664
tnrc18
Trinucleotide repeat containing 18.
   
    0.659
ENSSORP00005050131
Nuclear transcription factor Y, beta a.
   
    0.659
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.