STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vma21Vacuolar ATPase assembly factor VMA21. (103 aa)    
Predicted Functional Partners:
atp6v0b
ATPase H+ transporting V0 subunit b.
    
 
 0.946
LOC115417011
V-type proton ATPase subunit d 1.
   
 
 0.938
LOC115437976
V-type proton ATPase subunit d 1-like.
   
 
 0.938
LOC115424258
V-type proton ATPase 16 kDa proteolipid subunit.
    
 
 0.934
ATP6V0C
V-type proton ATPase 16 kDa proteolipid subunit-like.
    
 
 0.934
atp6ap2
ATPase H+ transporting accessory protein 2.
   
 
 0.899
tmem199
Transmembrane protein 199.
   
   0.878
atp6v1f
ATPase H+ transporting V1 subunit F.
   
 
 0.836
ATP5MC1
ATP synthase F(0) complex subunit C3, mitochondrial-like.
    
 
 0.798
LOC115417048
ATP synthase F(0) complex subunit C3, mitochondrial-like.
    
 
 0.798
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.