STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSORP00005003980Zinc finger CCCH-type containing 18. (898 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.862
ncbp2
Nuclear cap binding protein subunit 2.
   
 0.844
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.793
sf3a2
Splicing factor 3a subunit 2.
   
   0.694
LOC115412982
E3 SUMO-protein ligase RanBP2-like.
    
 0.690
ENSSORP00005029795
annotation not available
    
  0.666
ENSSORP00005029797
annotation not available
    
  0.666
slain2
SLAIN motif family member 2.
    
 0.637
ENSSORP00005013837
annotation not available
    
  0.630
ENSSORP00005015393
annotation not available
    
  0.630
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.