STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSORP00005004952SPG11 vesicle trafficking associated, spatacsin. (2112 aa)    
Predicted Functional Partners:
ENSSORP00005047960
Zinc finger, FYVE domain containing 26.
   
 
 0.814
ap5z1
Adaptor related protein complex 5 subunit zeta 1.
    
 
 0.729
ap5m1
Adaptor related protein complex 5 subunit mu 1.
    
 
 0.693
ENSSORP00005044648
Tectonin beta-propeller repeat containing 2.
   
  
 0.619
gak
Cyclin G associated kinase.
      
 0.614
ap5s1
Adaptor related protein complex 5 subunit sigma 1.
    
 
 0.613
spg21
SPG21 abhydrolase domain containing, maspardin.
      
 0.610
ENSSORP00005008101
DnaJ (Hsp40) homolog, subfamily C, member 6.
      
 0.610
ENSSORP00005011245
DnaJ (Hsp40) homolog, subfamily C, member 6.
      
 0.610
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
      
 0.539
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.