STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snapc5Small nuclear RNA activating complex polypeptide 5. (122 aa)    
Predicted Functional Partners:
snapc3
Small nuclear RNA activating complex polypeptide 3.
    
 0.987
LOC115426799
snRNA-activating protein complex subunit 1-like.
    
 0.982
snapc1
Small nuclear RNA activating complex polypeptide 1.
    
 0.982
gtf2b
General transcription factor IIB.
    
 0.962
ENSSORP00005014257
General transcription factor IIA, 1.
    
  0.918
gtf2a2
General transcription factor IIA subunit 2.
    
  0.918
LOC115413887
TATA-box-binding protein-like.
    
 0.866
tbp
TATA-box binding protein.
    
 0.866
ENSSORP00005054244
General transcription factor IIA, 1-like.
    
  0.856
ENSSORP00005001451
annotation not available
    
 0.800
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.