STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rad1RAD1 checkpoint DNA exonuclease. (279 aa)    
Predicted Functional Partners:
hus1
HUS1 checkpoint clamp component.
    
 0.999
ENSSORP00005011389
Replication factor C (activator 1) 4.
   
 0.997
rad17
RAD17 checkpoint clamp loader component.
   
 0.996
ENSSORP00005054954
SMC5-SMC6 complex localization factor 1.
    
 0.993
ENSSORP00005005724
Replication factor C (activator 1) 5.
   
 0.992
rad9a
RAD9 checkpoint clamp component A.
    
 0.992
ENSSORP00005042867
annotation not available
    
 0.992
LOC115422254
Replication factor C subunit 2-like.
   
 0.991
rfc3
Replication factor C subunit 3.
   
 0.989
cdca7l
Cell division cycle associated 7 like.
    
 0.980
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.