STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpsf4Cleavage and polyadenylation specific factor 4. (266 aa)    
Predicted Functional Partners:
fip1l1
Factor interacting with PAPOLA and CPSF1.
    
 0.999
ENSSORP00005024595
annotation not available
    
 0.999
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.999
cpsf2
Cleavage and polyadenylation specific factor 2.
   
 0.999
sympk
Symplekin.
   
 0.999
cstf2
Cleavage stimulation factor subunit 2.
   
 0.998
ENSSORP00005027540
poly(A) polymerase gamma.
    
 0.998
cstf1
Cleavage stimulation factor subunit 1.
   
 0.996
cstf3
Cleavage stimulation factor subunit 3.
   
 0.995
nudt21
Nudix hydrolase 21.
    
 0.995
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.