STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115426962Zinc-binding protein A33-like. (430 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
  0.508
LOC115438809
Ubiquilin-4-like.
    
  0.488
ENSSORP00005024962
annotation not available
    
  0.483
ubb
Ubiquitin B.
    
  0.483
ENSSORP00005038754
Ubiquitin B.
    
  0.483
ENSSORP00005058574
annotation not available
    
  0.483
zfand4
Zinc finger AN1-type containing 4.
    
  0.475
LOC115430514
Ubiquitin-conjugating enzyme E2 L3-like.
    
  0.467
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
    
  0.444
ENSSORP00005015564
DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a.
   
  0.442
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.