STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115414353Putative nuclease HARBI1. (434 aa)    
Predicted Functional Partners:
sorl1
Sortilin related receptor 1.
    
 0.806
PTK7
Protein tyrosine kinase 7 (inactive).
    
  0.679
LOC115424605
Uncharacterized LOC115424605.
    
  0.600
ENSSORP00005010396
annotation not available
    
  0.600
ntf3
Neurotrophin 3.
    
  0.600
ENSSORP00005039922
Nerve growth factor a (beta polypeptide).
    
  0.600
ENSSORP00005005657
Nerve growth factor receptor a (TNFR superfamily, member 16).
    
  0.593
LOC115419763
Nerve growth factor-like.
     
 0.537
bdnf
Brain derived neurotrophic factor.
     
 0.535
ENSSORP00005026265
annotation not available
   
 
 0.506
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.