STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115412591Transcription factor Sox-1a. (344 aa)    
Predicted Functional Partners:
LOC115429546
POU domain, class 5, transcription factor 1-like.
    
 0.877
ctnnb1
Catenin beta 1.
    
 0.694
sall4
Spalt like transcription factor 4.
   
 0.606
ENSSORP00005021929
annotation not available
    
 0.592
LOC115419697
Junction plakoglobin-like.
    
 0.592
LOC115428257
Catenin beta-1-like.
    
 0.592
LOC115424292
SUMO-conjugating enzyme UBC9-like.
    
   0.565
ube2i
Ubiquitin conjugating enzyme E2 I.
    
   0.565
nr5a1
Nuclear receptor subfamily 5 group A member 1.
    
 0.561
ENSSORP00005054552
Nuclear receptor subfamily 5, group A, member 2.
    
 0.561
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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