LOC115411612 protein (Sphaeramia orbicularis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115411612

Growth arrest-specific protein 2-like. (475 aa)

Predicted Functional Partners:

ENSSORP00005032115

0.783

ENSSORP00005008540

0.689

ENSSORP00005048505

0.669

ITSN2

0.669

trrap

0.640

supt3h

0.637

tada3

0.633

ENSSORP00005001970

0.625

taf10

0.606

LOC115432783

0.590

Your Current Organism:

Sphaeramia orbicularis

NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSORP00005001970	ENSSORP00005032115	ENSSORP00005001970	ENSSORP00005032115	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Ciliogenesis associated TTC17 interacting protein.	0.413
ENSSORP00005001970	LOC115411612	ENSSORP00005001970	ENSSORP00005012317	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Growth arrest-specific protein 2-like.	0.625
ENSSORP00005001970	LOC115432783	ENSSORP00005001970	ENSSORP00005049998	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 9-like.	0.999
ENSSORP00005001970	supt3h	ENSSORP00005001970	ENSSORP00005056650	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SPT3 homolog, SAGA and STAGA complex component.	0.999
ENSSORP00005001970	tada3	ENSSORP00005001970	ENSSORP00005026054	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcriptional adaptor 3.	0.998
ENSSORP00005001970	taf10	ENSSORP00005001970	ENSSORP00005008103	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 10.	0.999
ENSSORP00005001970	trrap	ENSSORP00005001970	ENSSORP00005029734	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transformation/transcription domain associated protein.	0.999
ENSSORP00005008540	ENSSORP00005032115	ENSSORP00005008540	ENSSORP00005032115	Adenylate kinase 8.	Ciliogenesis associated TTC17 interacting protein.	0.610
ENSSORP00005008540	LOC115411612	ENSSORP00005008540	ENSSORP00005012317	Adenylate kinase 8.	Growth arrest-specific protein 2-like.	0.689
ENSSORP00005032115	ENSSORP00005001970	ENSSORP00005032115	ENSSORP00005001970	Ciliogenesis associated TTC17 interacting protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.413
ENSSORP00005032115	ENSSORP00005008540	ENSSORP00005032115	ENSSORP00005008540	Ciliogenesis associated TTC17 interacting protein.	Adenylate kinase 8.	0.610
ENSSORP00005032115	LOC115411612	ENSSORP00005032115	ENSSORP00005012317	Ciliogenesis associated TTC17 interacting protein.	Growth arrest-specific protein 2-like.	0.783
ENSSORP00005032115	LOC115432783	ENSSORP00005032115	ENSSORP00005049998	Ciliogenesis associated TTC17 interacting protein.	Transcription initiation factor TFIID subunit 9-like.	0.413
ENSSORP00005032115	supt3h	ENSSORP00005032115	ENSSORP00005056650	Ciliogenesis associated TTC17 interacting protein.	SPT3 homolog, SAGA and STAGA complex component.	0.412
ENSSORP00005032115	tada3	ENSSORP00005032115	ENSSORP00005026054	Ciliogenesis associated TTC17 interacting protein.	Transcriptional adaptor 3.	0.407
ENSSORP00005032115	taf10	ENSSORP00005032115	ENSSORP00005008103	Ciliogenesis associated TTC17 interacting protein.	TATA-box binding protein associated factor 10.	0.411
ENSSORP00005032115	trrap	ENSSORP00005032115	ENSSORP00005029734	Ciliogenesis associated TTC17 interacting protein.	Transformation/transcription domain associated protein.	0.413
ENSSORP00005048505	ITSN2	ENSSORP00005048505	ENSSORP00005054528	Intersectin 2b.	Intersectin 2.	0.989
ENSSORP00005048505	LOC115411612	ENSSORP00005048505	ENSSORP00005012317	Intersectin 2b.	Growth arrest-specific protein 2-like.	0.669
ITSN2	ENSSORP00005048505	ENSSORP00005054528	ENSSORP00005048505	Intersectin 2.	Intersectin 2b.	0.989