STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115435939Homeobox protein Hox-A10b-like. (335 aa)    
Predicted Functional Partners:
LOC115428512
Homeobox protein Hox-A9.
   
  
0.870
HOXA7
Homeobox A7.
   
 
0.771
hoxd10
Homeobox D10.
   
 
0.569
LOC115423398
Homeobox protein Hox-B5a-like.
   
 
0.540
hoxa3
Homeobox A3.
   
 
0.523
ENSSORP00005002519
annotation not available
   
 
0.508
ENSSORP00005008889
Homeobox B7a.
   
 
0.504
ENSSORP00005043423
Homeobox C10a.
   
 
0.500
ENSSORP00005009097
annotation not available
    
 
 0.434
LOC115423845
pre-B-cell leukemia transcription factor 1-like.
    
 
 0.434
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.