STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115428623Sal-like protein 3. (1275 aa)    
Predicted Functional Partners:
LOC115429546
POU domain, class 5, transcription factor 1-like.
   
 0.768
LOC115428149
Histone-binding protein RBBP4-like.
    
  0.679
LOC115438548
Histone-binding protein RBBP7.
    
  0.679
LOC115413477
Histone-binding protein RBBP4.
    
  0.679
ENSSORP00005009220
GATA zinc finger domain containing 2Ab.
    
  0.655
gatad2b
GATA zinc finger domain containing 2B.
    
  0.655
LOC115437094
Transcriptional repressor p66 alpha-like.
    
  0.655
ENSSORP00005001103
annotation not available
   
  0.649
mbd3
methyl-CpG binding domain protein 3.
   
  0.649
wdr73
WD repeat domain 73.
    
 0.634
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.