STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf144bRing finger protein 144B. (355 aa)    
Predicted Functional Partners:
LOC115430514
Ubiquitin-conjugating enzyme E2 L3-like.
   
 0.772
LOC115420646
Ubiquitin-conjugating enzyme E2 variant 3-like.
   
 0.735
rnf216
Ring finger protein 216.
    
 0.689
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.682
LOC115437146
ubiquitin-60S ribosomal protein L40-like.
    
  0.646
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.646
rps27a
Ribosomal protein S27a.
    
 0.643
LOC115438809
Ubiquilin-4-like.
    
 0.643
LOC115411133
Uncharacterized LOC115411133.
    
 0.630
rbx1
Ring-box 1.
    
 0.603
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.