STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115428105GA-binding protein subunit beta-2-like. (426 aa)    
Predicted Functional Partners:
gabpa
GA binding protein transcription factor subunit alpha.
    
 0.996
casp2
Caspase 2.
    
  0.869
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.765
tp73
Tumor protein p73.
    
  0.740
ENSSORP00005056399
Tumor protein p63.
    
  0.740
LOC115415203
Cathepsin B-like.
    
   0.739
LOC115416194
Cathepsin B-like.
    
   0.739
ENSSORP00005008930
Polymerase (RNA) mitochondrial (DNA directed).
    
 0.690
ENSSORP00005031090
Tpd52 like 2b.
    
  0.685
ENSSORP00005031238
Tpd52 like 2b.
    
  0.685
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.