STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSORP00005016296Transmembrane inner ear. (151 aa)    
Predicted Functional Partners:
ENSSORP00005030509
annotation not available
   
 
 0.765
TMC1
Transmembrane channel like 1.
   
 
 0.765
CIB2
Calcium and integrin binding family member 2.
     
 0.681
ENSSORP00005041222
Calcium and integrin binding family member 3.
     
 0.681
ENSSORP00005056677
Calcium and integrin binding family member 2.
     
 0.681
ENSSORP00005005438
LHFPL tetraspan subfamily member 4a.
     
 0.620
LOC115429567
LHFPL tetraspan subfamily member 3 protein.
     
 0.620
ENSSORP00005019107
annotation not available
     
 0.620
ENSSORP00005032685
LHFPL tetraspan subfamily member 5a.
     
 0.620
LHFPL4
LHFPL tetraspan subfamily member 4.
     
 0.620
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.