STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115419858Histone deacetylase 7-like. (948 aa)    
Predicted Functional Partners:
ENSSORP00005001606
Translocase of outer mitochondrial membrane 20.
    
 0.944
ENSSORP00005032619
AT rich interactive domain 4A (RBP1-like).
    
 0.944
ENSSORP00005035149
annotation not available
    
 0.944
LOC115433192
Core histone macro-H2A.1.
    
 0.872
LOC115434488
Core histone macro-H2A.2.
    
 0.872
LOC115425465
Lysine-specific demethylase 2B-like.
    
 0.816
LOC115424030
Lysine-specific demethylase 2B-like.
    
 0.816
ENSSORP00005023183
Lysine (K)-specific demethylase 2Ab.
    
 0.816
LOC115430864
Lysine-specific demethylase 2B-like.
    
 0.816
LOC115418584
Lysine-specific demethylase 2A-like.
    
 0.816
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.