STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSORP00005017749annotation not available (76 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.877
LOC115437146
ubiquitin-60S ribosomal protein L40-like.
    
 0.797
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.797
ENSSORP00005015511
Ubiquitin-conjugating enzyme E2 variant 2.
   
 0.739
ENSSORP00005024962
annotation not available
    
  0.713
ubb
Ubiquitin B.
    
  0.713
ENSSORP00005038754
Ubiquitin B.
    
  0.713
ENSSORP00005058574
annotation not available
    
  0.713
smad6
SMAD family member 6.
   
 0.711
smad7
SMAD family member 7.
   
 0.711
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.