STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx56DEAD-box helicase 56. (557 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 0.997
ENSSORP00005035657
CCAAT enhancer binding protein zeta.
   
 0.996
rbm28
RNA binding motif protein 28.
   
 
 0.985
ebna1bp2
EBNA1 binding protein 2.
   
 0.985
ddx24
DEAD-box helicase 24.
  
 
0.985
ENSSORP00005057825
Pescadillo.
   
 0.985
noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
 0.983
nop58
NOP58 ribonucleoprotein.
  
 0.983
rbm34
RNA binding motif protein 34.
   
 0.982
brix1
Biogenesis of ribosomes BRX1.
   
 0.979
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.