slbp protein (Sphaeramia orbicularis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

slbp

Stem-loop binding protein. (275 aa)

Predicted Functional Partners:

mif4gd

0.984

eri1

0.978

ENSSORP00005009396

0.948

ENSSORP00005009391

0.944

ENSSORP00005004428

0.921

lsm11

0.891

NCBP1

0.833

ENSSORP00005042719

0.828

snrpd1

0.787

ybx1

0.781

Your Current Organism:

Sphaeramia orbicularis

NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSORP00005004428	eri1	ENSSORP00005004428	ENSSORP00005038579	annotation not available	Exoribonuclease 1.	0.538
ENSSORP00005004428	lsm11	ENSSORP00005004428	ENSSORP00005043234	annotation not available	LSM11, U7 small nuclear RNA associated.	0.715
ENSSORP00005004428	slbp	ENSSORP00005004428	ENSSORP00005018928	annotation not available	Stem-loop binding protein.	0.921
ENSSORP00005009391	NCBP1	ENSSORP00005009391	ENSSORP00005031705	annotation not available	Nuclear cap binding protein subunit 1.	0.495
ENSSORP00005009391	slbp	ENSSORP00005009391	ENSSORP00005018928	annotation not available	Stem-loop binding protein.	0.944
ENSSORP00005009396	NCBP1	ENSSORP00005009396	ENSSORP00005031705	CBP80/20-dependent translation initiation factor.	Nuclear cap binding protein subunit 1.	0.495
ENSSORP00005009396	slbp	ENSSORP00005009396	ENSSORP00005018928	CBP80/20-dependent translation initiation factor.	Stem-loop binding protein.	0.948
ENSSORP00005042719	NCBP1	ENSSORP00005042719	ENSSORP00005031705	Organic solute carrier partner 1a.	Nuclear cap binding protein subunit 1.	0.974
ENSSORP00005042719	lsm11	ENSSORP00005042719	ENSSORP00005043234	Organic solute carrier partner 1a.	LSM11, U7 small nuclear RNA associated.	0.981
ENSSORP00005042719	slbp	ENSSORP00005042719	ENSSORP00005018928	Organic solute carrier partner 1a.	Stem-loop binding protein.	0.828
ENSSORP00005042719	snrpd1	ENSSORP00005042719	ENSSORP00005007762	Organic solute carrier partner 1a.	Small nuclear ribonucleoprotein D1 polypeptide.	0.591
ENSSORP00005042719	ybx1	ENSSORP00005042719	ENSSORP00005008067	Organic solute carrier partner 1a.	Y-box binding protein 1.	0.616
NCBP1	ENSSORP00005009391	ENSSORP00005031705	ENSSORP00005009391	Nuclear cap binding protein subunit 1.	annotation not available	0.495
NCBP1	ENSSORP00005009396	ENSSORP00005031705	ENSSORP00005009396	Nuclear cap binding protein subunit 1.	CBP80/20-dependent translation initiation factor.	0.495
NCBP1	ENSSORP00005042719	ENSSORP00005031705	ENSSORP00005042719	Nuclear cap binding protein subunit 1.	Organic solute carrier partner 1a.	0.974
NCBP1	lsm11	ENSSORP00005031705	ENSSORP00005043234	Nuclear cap binding protein subunit 1.	LSM11, U7 small nuclear RNA associated.	0.696
NCBP1	slbp	ENSSORP00005031705	ENSSORP00005018928	Nuclear cap binding protein subunit 1.	Stem-loop binding protein.	0.833
NCBP1	snrpd1	ENSSORP00005031705	ENSSORP00005007762	Nuclear cap binding protein subunit 1.	Small nuclear ribonucleoprotein D1 polypeptide.	0.987
NCBP1	ybx1	ENSSORP00005031705	ENSSORP00005008067	Nuclear cap binding protein subunit 1.	Y-box binding protein 1.	0.771
eri1	ENSSORP00005004428	ENSSORP00005038579	ENSSORP00005004428	Exoribonuclease 1.	annotation not available	0.538