STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vti1aVesicle transport through interaction with t-SNAREs 1A. (224 aa)    
Predicted Functional Partners:
stx5
Syntaxin 5.
    
 0.999
stx16
Syntaxin 16.
   
 0.999
ykt6
YKT6 v-SNARE homolog.
    
 0.998
vamp4
Vesicle associated membrane protein 4.
   
 0.998
LOC115425943
Vesicle-associated membrane protein 8-like.
   
 0.998
stx8
Syntaxin 8.
   
 0.998
vps45
Vacuolar protein sorting 45 homolog.
   
 0.996
LOC115429187
Vesicle-associated membrane protein 8-like.
   
 0.992
stx17
Syntaxin 17.
   
 0.990
VAMP3
Vesicle-associated membrane protein 3-like.
   
 0.990
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.