STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo2LIM domain only 2. (168 aa)    
Predicted Functional Partners:
LOC115419149
GATA-binding factor 1-B-like.
    
 0.986
LOC115437084
T-cell acute lymphocytic leukemia protein 1.
   
 0.984
ENSSORP00005052944
annotation not available
   
 0.984
LOC115433974
LIM domain-binding protein 1-like.
    
 0.964
LOC115419720
LIM domain-binding protein 1.
    
 0.964
ldb2
LIM domain binding 2.
    
 0.956
gata6
GATA binding protein 6.
    
 0.857
gata5
GATA binding protein 5.
    
 0.857
ENSSORP00005047019
GATA binding protein 4.
    
 0.857
tcf3
Transcription factor 3.
    
 0.835
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.