STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nelfbNegative elongation factor complex member B. (594 aa)    
Predicted Functional Partners:
nelfa
Negative elongation factor complex member A.
   
 0.998
nelfcd
Negative elongation factor complex member C/D.
   
 0.998
nelfe
Negative elongation factor complex member E.
    
 0.997
supt5h
SPT5 homolog, DSIF elongation factor subunit.
   
 0.996
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.992
POLR2E
RNA polymerase II subunit E.
    
 0.974
pcca
propionyl-CoA carboxylase subunit alpha.
   
 0.972
polr2i
RNA polymerase II subunit I.
    
 0.972
ENSSORP00005056610
methylcrotonoyl-CoA carboxylase 1 (alpha).
   
 0.972
polr2h
RNA polymerase II subunit H.
    
  0.963
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.