STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam20bFAM20B glycosaminoglycan xylosylkinase. (409 aa)    
Predicted Functional Partners:
ENSSORP00005000537
annotation not available
  
 
0.862
ENSSORP00005000724
annotation not available
  
 
0.862
ENSSORP00005016781
Family with sequence similarity 20 member C, like.
  
 
0.862
LOC115424399
Extracellular serine/threonine protein kinase FAM20C-like.
    
0.858
LOC115410178
Extracellular serine/threonine protein kinase FAM20C-like.
    
0.858
LOC115435596
Syndecan-2-like.
    
  0.658
ENSSORP00005025696
Membrane-bound transcription factor peptidase, site 1.
     
 0.645
qsox2
Quiescin sulfhydryl oxidase 2.
     
 0.640
qsox1
Quiescin sulfhydryl oxidase 1.
     
 0.640
ENSSORP00005001027
SPARC-like 1.
     
 0.639
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.