STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc30a9Solute carrier family 30 member 9. (568 aa)    
Predicted Functional Partners:
LOC115420646
Ubiquitin-conjugating enzyme E2 variant 3-like.
  
    0.804
LOC115430506
L-lactate dehydrogenase B chain.
  
    0.769
ENSSORP00005008493
Malate dehydrogenase 1B, NAD (soluble).
  
    0.769
MDH1
Malate dehydrogenase, cytoplasmic-like.
  
    0.769
ENSSORP00005042662
Lactate dehydrogenase A4.
  
    0.769
LOC115421253
L-lactate dehydrogenase C chain.
  
    0.769
LOC115434090
Malate dehydrogenase, cytoplasmic.
  
    0.769
fam114a1
Family with sequence similarity 114 member A1.
  
    0.769
slc30a4
Solute carrier family 30 member 4.
  
 
 0.653
SLC39A11
Solute carrier family 39 member 11.
     
 0.652
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.