STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pou4f3POU class 4 homeobox 3. (352 aa)    
Predicted Functional Partners:
tp53
Tumor protein p53.
     
 0.627
ENSSORP00005021065
SRY-box transcription factor 10.
    
 
 0.477
ENSSORP00005039710
Intraflagellar transport 88 homolog.
      
 0.447
LOC115432466
Peripherin-2-like.
      
 0.426
ENSSORP00005044892
annotation not available
      
 0.424
PROP1
PROP paired-like homeobox 1.
   
 
 0.422
ENSSORP00005048061
POU class 6 homeobox 2.
   
 
0.421
pou6f1
POU class 6 homeobox 1.
   
 
0.421
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.