STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx52DExD-box helicase 52. (674 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.999
pdcd11
Programmed cell death 11.
   
 0.999
dcaf13
DDB1 and CUL4 associated factor 13.
   
 0.998
nop14
NOP14 nucleolar protein.
   
 
 0.998
ddx47
DEAD-box helicase 47.
  
0.997
ENSSORP00005020525
WD repeat domain 46.
   
 
 0.997
bysl
Bystin like.
   
 0.997
ddx49
DEAD-box helicase 49.
  
0.997
utp11
UTP11 small subunit processome component.
   
 
 0.996
LOC115435969
Periodic tryptophan protein 2 homolog.
   
 0.996
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.