STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115432699Neuronal PAS domain-containing protein 2-like. (867 aa)    
Predicted Functional Partners:
ENSSORP00005000418
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
0.943
ARNTL2
Aryl hydrocarbon receptor nuclear translocator-like protein 2.
   
0.922
ENSSORP00005057688
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
0.922
ENSSORP00005029543
Period circadian clock 1b.
    
0.879
LOC115432101
Period circadian protein homolog 2-like.
    
0.879
per3
Period circadian regulator 3.
    
0.879
LOC115436872
Period circadian protein homolog 2-like.
    
0.879
LOC115422244
Cryptochrome-1-like.
    
 0.877
LOC115421597
Deoxyribodipyrimidine photo-lyase-like.
    
 0.871
LOC115420684
Cryptochrome-2-like.
    
 0.871
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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