STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX3LIM homeobox 3. (401 aa)    
Predicted Functional Partners:
ISL2
ISL LIM homeobox 2.
   
0.899
LOC115425594
Insulin gene enhancer protein ISL-1.
   
0.894
isl2
ISL LIM homeobox 2.
   
0.894
ALX3
ALX homeobox 3.
   
0.861
ldb2
LIM domain binding 2.
    
 0.814
LOC115433974
LIM domain-binding protein 1-like.
    
 0.814
LOC115419720
LIM domain-binding protein 1.
    
 0.814
PROP1
PROP paired-like homeobox 1.
    
0.650
LOC115417814
Single-stranded DNA-binding protein 3-like.
    
 
 0.571
ENSSORP00005004916
annotation not available
    
 
 0.571
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.