STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppoxProtoporphyrinogen oxidase. (476 aa)    
Predicted Functional Partners:
urod
Uroporphyrinogen decarboxylase.
  
 
 0.990
ENSSORP00005007341
annotation not available
  
 
 0.983
ENSSORP00005007346
annotation not available
  
 
 0.983
cpox
Coproporphyrinogen oxidase.
  
 
 0.951
oat
Ornithine aminotransferase.
  
 
 0.929
LOC115410525
uroporphyrinogen-III synthase-like.
  
 
 0.909
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
    
 0.883
ENSSORP00005033369
annotation not available
    
 0.883
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
    
 0.883
gale
UDP-galactose-4-epimerase.
    
  0.870
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.