STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115436798Junctophilin-1-like. (678 aa)    
Predicted Functional Partners:
jph2
Junctophilin 2.
  
  
 
0.794
ENSSORP00005025829
Junctophilin 3.
  
  
 
0.792
ENSSORP00005048320
annotation not available
  
  
 
0.721
rabgef1
RAB guanine nucleotide exchange factor 1.
   
 0.718
ENSSORP00005047625
Si:ch211-146m13.3.
  
  
 
0.718
LOC115425892
Rab5 GDP/GTP exchange factor-like.
   
 0.718
asb5
Ankyrin repeat and SOCS box containing 5.
   
 0.531
ENSSORP00005021008
Ankyrin repeat and SOCS box containing 11.
   
 0.531
ENSSORP00005032878
annotation not available
   
 0.531
LOC115418903
Ankyrin repeat and SOCS box protein 5-like.
   
 0.531
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.