STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115430968Multidrug and toxin extrusion protein 1-like. (600 aa)    
Predicted Functional Partners:
ENSSORP00005023769
Hydroxysteroid (17-beta) dehydrogenase 10.
    
 0.918
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
   
 
 0.803
ENSSORP00005052787
POP5 homolog, ribonuclease P/MRP subunit.
     
 0.730
LOC115418258
Ribonuclease P protein subunit p21-like.
    
 0.725
ENSSORP00005028080
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 0.719
trmt10a
tRNA methyltransferase 10A.
   
 0.719
ENSSORP00005045554
tRNA methyltransferase 10B.
   
 0.719
rpp30
Ribonuclease P/MRP subunit p30.
   
 
 0.684
pdcd11
Programmed cell death 11.
  
    0.681
pop4
POP4 homolog, ribonuclease P/MRP subunit.
     
 0.669
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.