STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sf1Splicing factor 1. (680 aa)    
Predicted Functional Partners:
ddx46
DEAD-box helicase 46.
   
 0.998
u2af2
U2 small nuclear RNA auxiliary factor 2.
   
 0.998
sf3a1
Splicing factor 3a subunit 1.
   
 0.997
sf3a2
Splicing factor 3a subunit 2.
   
 0.995
ENSSORP00005001214
annotation not available
   
 0.993
sf3b1
Splicing factor 3b subunit 1.
   
 0.990
sf3a3
Splicing factor 3a subunit 3.
   
 0.981
ENSSORP00005017535
annotation not available
   
 0.978
ncbp2
Nuclear cap binding protein subunit 2.
    
 0.977
ENSSORP00005020788
annotation not available
   
 0.972
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.