STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115414950WD repeat-containing protein 20-like. (643 aa)    
Predicted Functional Partners:
ENSSORP00005036118
WD repeat domain 48b.
    
 0.954
ENSSORP00005017745
Ubiquitin specific peptidase 12a.
    
 0.875
ENSSORP00005017817
Ubiquitin specific peptidase 12a.
    
 0.875
usp46
Ubiquitin specific peptidase 46.
    
 0.875
ENSSORP00005033216
Ubiquitin specific peptidase 12b.
    
 0.875
mad2l1
Mitotic arrest deficient 2 like 1.
   
 0.795
ENSSORP00005001970
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.781
LOC115432783
Transcription initiation factor TFIID subunit 9-like.
    
 0.781
taf10
TATA-box binding protein associated factor 10.
    
 0.780
ENSSORP00005012595
annotation not available
    
 0.772
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.