STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
skilSKI like proto-oncogene. (768 aa)    
Predicted Functional Partners:
LOC115427970
Mothers against decapentaplegic homolog 4-like.
    
 0.940
SMAD4
SMAD family member 4.
    
 0.940
ENSSORP00005048274
annotation not available
    
 0.940
LOC115420826
Mothers against decapentaplegic homolog 3-like.
   
 0.909
ENSSORP00005026100
annotation not available
   
 0.909
LOC115425515
Mothers against decapentaplegic homolog 2.
   
 0.909
LOC115439500
Mothers against decapentaplegic homolog 3.
   
 0.909
ski
SKI proto-oncogene.
    
 
0.868
smad9
SMAD family member 9.
   
 0.828
smad1
SMAD family member 1.
   
 0.828
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.