STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlbp1Retinaldehyde binding protein 1. (307 aa)    
Predicted Functional Partners:
ankfy1
Ankyrin repeat and FYVE domain containing 1.
    
  0.555
sdr16c5
Short chain dehydrogenase/reductase family 16C member 5.
   
  0.548
ENSSORP00005028833
Retinol dehydrogenase 20.
   
  0.548
rdh10
Retinol dehydrogenase 10.
   
  0.548
LOC115419499
Retinol dehydrogenase 10-B-like.
   
  0.548
dhrs3
Dehydrogenase/reductase 3.
   
  0.548
ENSSORP00005042874
Retinol dehydrogenase 5 (11-cis/9-cis).
   
 0.490
sec63
SEC63 homolog, protein translocation regulator.
   
 
 0.490
LOC115426783
ADP-ribosylation factor-like protein 3.
   
  0.489
LOC115413044
Retinol dehydrogenase 7-like.
   
 0.470
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.