STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSORP00005029473Radial spoke head 10 homolog B. (552 aa)    
Predicted Functional Partners:
rabgef1
RAB guanine nucleotide exchange factor 1.
   
 0.718
LOC115425892
Rab5 GDP/GTP exchange factor-like.
   
 0.718
ENSSORP00005033620
annotation not available
    
 
 0.569
ENSSORP00005058407
Cilia and flagella associated protein 52.
    
 0.531
ENSSORP00005032332
Leucine rich repeat containing 23.
    
 
 0.503
ENSSORP00005054791
Leucine rich repeat containing 34.
    
 
 0.495
ENSSORP00005031571
Cilia and flagella associated protein 57.
    
 0.478
ENSSORP00005021133
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.472
ENSSORP00005000925
Ankyrin repeat domain 27 (VPS9 domain).
   
 0.453
gapvd1
GTPase activating protein and VPS9 domains 1.
   
 0.453
Your Current Organism:
Sphaeramia orbicularis
NCBI taxonomy Id: 375764
Other names: S. orbicularis, orbiculate cardinalfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.